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 Protocols    •     Bioinformatics    •     Publications

Bioinformatics

Download the ESAT code [GitHub]
See the Publications section below for the original paper.

Publications

Baron M, Veres A, Wolock SL, Faust AL, Gaujoux R, Vetere A, Ryu JH, Wagner BK, Shen-Orr SS, Klein AM, Melton DA, Yanai I.;
Cell Syst. 2016 Sep 21. pii: S2405-4712(16)30266-6. doi: 10.1016/j.cels.2016.08.011. A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure. [Epub ahead of print] PMID: 27667365

Klein et al.
2015, Cell 161, 1187-1201
Droplet Barcoding For Single-Cell Transcriptomics Applied To Embryonic Stem Cells

Marrying Microfluidics and Barcoding Technology / Cell, May 21, 2015, 161, Issue 5

Derr et al.
2016, Genome Research 26(10):1397-1410. Epub 2016 Jul 28 End Sequence Analysis Toolkit (ESAT) expands the extractable information from single-cell RNA-seq data.